PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000258530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 362aa    MW: 41125.8 Da    PI: 10.5027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000258530genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.77.2e-1316419895128
            NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++l g+kk Lvfy g+ap+gekt+W+mheyrl
  MDP0000258530 164 LgTRNLWGIKKALVFYAGKAPRGEKTNWIMHEYRL 198
                    2345569**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.61668224IPR003441NAC domain
PfamPF023657.3E-781198IPR003441NAC domain
SuperFamilySSF1019414.97E-17163224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADTXPTAVS KTPPKTSPHG LPKKRYRPRV PPFPSPSSYI FSSPPYVSSF KCRLACFAXR  60
ASEITTARXR ECKRHPLKCR PPIYSFHRGS GSTRRTRSCR YQFRSLPKSI STNTTPGSSQ  120
AWRCTGKRSG ISFRQGIGST RTVRGRTGRP EAATGRRPGP ISRLGTRNLW GIKKALVFYA  180
GKAPRGEKTN WIMHEYRLAD VDRSPRKKNS LRLDDWVLCR IYNKKGTVEN QQPQQQQEQQ  240
RTTSRNASSG SEFEDRKPDN LRCPPPPASV VPSRHVSDYV YFDNSDSVPK LHTDSSCSEQ  300
VVSPELACEV QSEPKWKEWE KALEMPYSYM DTTVENGFGA QFQSGNEMSP LQDIFMYLQK  360
PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-18171229113173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144750.0bud| cell culture| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338660.11e-121PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 2
SwissprotQ390133e-70NAC2_ARATH; NAC domain-containing protein 2
TrEMBLD9ZJ921e-121D9ZJ92_MALDO; NAC domain class transcription factor
STRINGPOPTR_0002s08150.12e-82(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-70NAC family protein